Research Project Portals

JOINT Retreat Dobzhansky Center and Algorhythmic Biology Laboratory

was help in Repino May 31 - June 2 2013 Agenda
May 31
10:00am Meet at Ozerki station for the bus
12:00pm Check in and looking around
01:45 - 02:00 Steve O'Brien Opening speech
02:00 - 02:40 Nikolay Vyahhi and Andrei Balandin Open Science and Online Education in Bioinfirmatics
02:40 - 03:40 Lunch
03:40 - 04:00Ekaterina Chernyaeva Whole Genome Sequencing of Russian Mycobacterium tuberculosis strains
04:00 - 04:20Serguei Simonov GBrowser as a tool for genome information integration
04:20 - 04:40Andrey Prjibelski Simple and reliable approach for using multiple paired - end and mate - pair libraries.
04:40 - 05:00 Ira Vasilinec Filtering out erroneous read - pair information.
05:00 - 05:20Kira Vyatkina Comparative analysis of strategies for de novo antibody sequencing
05:20 - 05:40Stephen J. O’Brien Cat genome projects overview
05:40 - 06:00Alex Makunin Construction of high - density genetic linkage map in domestic cat
06:00 - 06:20Anton Logachev Analysis of the repetitive elements in domestic cat (Felis catus) genome
06:20 - 07:00am Break and free time
07:00 - 09:00Dinner
June 1
07:30 - 10:00 Breakfast and free time
10:00 - 10:20Pavel Dobrynin Cheetah genome
10:20 - 10:40Valentin Fondaratov Comparative analysis project
10:40 - 11:00Sergey Nurk Chimeric edge detection in de Bruijn graphs using max - flow algorithm
11:00 - 11:20Anton Bankevich Using MDA artifact analisys to improve genome assembly
11:20 - 11:40Ksenia Krasheninnikova Use of uneven read coverage depth in bacterial single - cell repeat resolution
11:40 - 12:00Alexey Gurevich Quast: new frontiers.
12:00 - 12:20pm Break
12:20 - 12:40Olga Bazhenova Gene expression profiling of colon cancer cells by RNA sequencing.
12:40 - 01:00Anton Svitin It’s GWATCH time: the wealth of human SNPs clinical significance just a click away.
01:00 - 01:20Andrey Shevchenko CCR5 - gene mutation and plague. Role of infections in the gene selection
01:20 - 01:40Alla Lapidus SPAdes: Assembling microbes in the cloud
01:40 - 02:00Vladimir Bryukhin Genome methylation and its role in organism plasticity
02:00 - 03:00 Lunch
03:00 - 03:20Anna Gonchar Mechanical regulation of complex life cycles (Cnidaria, Trematods)
03:20 - 03:40Sergey Malov On survival data analysis in genome association study and AIDS research
03:40 - 04:00Aleksey Antonik Recent Developments in Coverage Problem
04:00 - 04:20Dmitry Antipov SPAdes and hybrid genome assembly/Assembly postprocessing in SPAdes.
04:20 - 04:40Gaik Tamazian Optimization model for protein conformational motion simulation
04:40 - Break and free time
07:00 Gala dinner
June 2
7:30 - 10:00 Breakfast and Check out
10:00 - 10:20Yana Safonova NGS assembly of highly polymorphic diploid genomes
10:20 - 10:40Vladislav Saveljev Meta - SPAdes
10:40 - 11:00Mikhail Rotkevich Development of а mycobacterium tuberculosis SNP database
11:00 - 11:20 break
11:20 - 11:40Nikolay Cherkasov
11:40 - 12:00Guan Li Examples for cohort development at population - based disease gene discovery
12:00 - 12:20 Stephen J. O'Brien Closing speech
12:20 - 03:00 Lunch and free time
03:15 pm Meet for the bus


[Best_Wordpress_Gallery id="8" gal_title="retreatMay2013"]

Theodosius Dobzhansky

Geneticist & Evolutionary Biologist
Theodosius Dobzhansky American geneticist and evolutionary biologist and a central figure in the field of evolutionary biology is recognized for...

Stephen J O'Brien

Chief Scientific Officer
I welcome you to the Site of the brand new Center of Genome Informatics at St Petersburg State University. The...

Vladimir Brukhin

Leading researcher, Deputy Director 
Vladimir Brukhin    Leading researcher, Deputy Director  Joined the Theodosius Dobzhansky Center for Genome Bioinformatics in February 2013 right after returning...

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